Superfamily classification in PIR-International Protein Sequence Database.
نویسندگان
چکیده
The database is made available directly from the PIR-International Centers and from a variety of sites on the World Wide Web.
منابع مشابه
PIR-ALN: a database of protein sequence alignments
MOTIVATION The Protein Information Resource (PIR) maintains a database of annotated and curated alignments in order to visually represent interrelationships among sequences in the PIR-International Protein Sequence Database, to spread and standardize protein names, features and keywords among members of a family or superfamily, and to aid us in classifying sequences, in identifying conserved re...
متن کاملDefinition of Protein Superfamily
Margaret O. Dayhoff introduced the term protein superfamily in 1974 [1,2,3]. Since that time, the sequences in the PIR-International Protein Sequence Database have been classified into protein superfamilies. Prior to about 1990, the superfamily classification permitted a sequence to be assigned to a single superfamily only. The recognition of mosaic, multidomain proteins, whose component domain...
متن کاملThe Protein Information Resource: an integrated public resource of functional annotation of proteins
The Protein Information Resource (PIR) serves as an integrated public resource of functional annotation of protein data to support genomic/proteomic research and scientific discovery. The PIR, in collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japan International Protein Information Database (JIPID), produces the PIR-International Protein Sequence Database ...
متن کاملThe Protein Information Resource
The Protein Information Resource (PIR) is an integrated public resource of protein informatics that supports genomic and proteomic research and scientific discovery. PIR maintains the Protein Sequence Database (PSD), an annotated protein database containing over 283 000 sequences covering the entire taxonomic range. Family classification is used for sensitive identification, consistent annotati...
متن کاملDatabase of protein sequence alignments: PIR-ALN
The Protein Information Resource (PIR) has been maintaining a database of curated protein sequence alignments since 1991. The collection includes superfamily, family and homology domain alignments. CLUSTAL V/W is used to generate multiple sequence alignments and ALNED, an interactive alignment editor, is used to check and correct them. The database has helped in classifying sequences, in defini...
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ورودعنوان ژورنال:
- Methods in enzymology
دوره 266 شماره
صفحات -
تاریخ انتشار 1996